AT3G53290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.890 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cytochrome P450, family 71, subfamily B, polypeptide 30 pseudogene | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
missing N-term 80 AA not found between end of 71B5 and start of this sequence probably a pseudogene, from http://drnelson.utmem.edu/biblioD.html | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cytochrome P450, family 71, subfamily B, polypeptide 30 pseudogene (CYP71B30P); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71, subfamily B, polypeptide 8 (TAIR:AT5G35715.1); Has 29738 Blast hits to 29642 proteins in 1574 species: Archae - 51; Bacteria - 3015; Metazoa - 10995; Fungi - 5587; Plants - 8999; Viruses - 3; Other Eukaryotes - 1088 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:19758157..19759603 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46505.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.36 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||
| Length | 407 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFFYLYLSSS AKEVLKTHDL ETCTRPKMVT TGLFSYNFKD IGFTQYGEEW GEMKKLIGLE LFSPKTQKSF RYIREEESDL LVKKISKSAQ TQTLVDLGKP 101: LFSFTAGIIF RLAFGQNFRK CDFIDRERVE ELVVESETNV GTLAFSDFFP TGLGWLIDRL SGQSSRMNKV FSKLTNLFEH VIDDHLKTEQ HQDHSNLISA 201: MLNMINKPTN IGSFKITSDH LKGVMSVSVY DFLTGTLIRA TLGSNKERIT EEDLEKVEYL KMVIEETFRL HPPAPLLLPR LTMSDVTIQG YNIPKNTMIE 301: INTYTIGRDP KCWTNPEEFI PERFSNTSIN YKGQHFELLP FGAGRRSCPG MSLGITILEL GLLNLLYFFD WRLPNGMTIA DIDMEEVGAL NIAKKVPLEL 401: VPTLHHS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)