AT3G52980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.674 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504); BEST Arabidopsis thaliana protein match is: CCCH-type zinc fingerfamily protein with RNA-binding domain (TAIR:AT2G05160.1); Has 228 Blast hits to 174 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 226; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:19645660..19646962 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43303.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.25 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||||||||||
| Length | 381 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNFTEAMNVV HNRIHQLEPE NASKIIGYLL LMQDQNDRDM IRLAFCPDSV MRSMINCVKC ELAKNSHYNN IPSSDHIQIR KFGSLSGSSN QSLLVSASPP 101: SVLSMGTSFW ENTNDMDSSL KDNVQYFLDF EDSVTSPEFS TSFFSQKKQS LSLRTSRRSL SLPEFPLKIC HYFNKGFCKH GNNCHNNLSD EEHVVSPGSL 201: EKLEREIIEL LKSRRGAPIS IAFLPMMYHE KYGRSLQAEG YLTESQRHGK AGFSLTKLLA RLKNTIRLID RPHGQHSVIL AEDVSKFVEY TGERSEHGAI 301: LAGSRQVYLT FPAESSFTEH DVSNYFSEVG PVEDVRIPCQ QKRMYGFVTF VYMETVKRIL AKAILISYAE HVFSSSLTEH N |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)