AT3G52920.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Family of unknown function (DUF662) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Family of unknown function (DUF662) ; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF662) (TAIR:AT2G36410.2); Has 3173 Blast hits to 2602 proteins in 396 species: Archae - 87; Bacteria - 336; Metazoa - 1447; Fungi - 184; Plants - 193; Viruses - 5; Other Eukaryotes - 921 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:19624601..19625981 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 20668.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.08 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.04 | ||||||||||||||||||||||||
| Length | 177 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTTTNEATTQ PPQQMMSLSF SSQMSKEDEE MARSALSAFR AKEDEIEKRK MEVRERVKAQ LGRVEEETRR LASIREELET MADPMRKEVN WVRKKIDSVN 101: KELKPLGSTV QKKEREYKEA LDTFNEKNRE KVQLITKLME LVGESEKLRL KKLDELSRSI DTESESISQD KTIPIKN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)