AT3G52670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.754 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 1954 Blast hits to 1906 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 1949; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:19525247..19526737 | ||||||||||||
| Molecular Weight (calculated) | 45000.70 Da | ||||||||||||
| IEP (calculated) | 5.75 | ||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||
| Length | 384 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRNQGFTKED RMNQLPEDLI LRILSFLPTE LVIATSVLSK QWRSLWKLVP NLEFDSDDYE INPVDIGLWI GIAFARHLRE LVLYVAPKQT FTFPSSLCIC 101: NTLETLKLIL GIHVDIPCPV LLKSLRTLHL DSVSYKDEES IRNLLSSCPI LENLVVYEYW YNVVNFDIEV PSLKRLEICD VLHKKEFRRY TINVPCLKYL 201: RIEGLNKDFE LCLNAPELVE AYFTKGSLII ADKFLGSLKS AKRLSLDILA LKMHTRREEW WNLLTVMLDS SPKLQVLKLI DHTQDVSKDN VVSEKWNEPK 301: YVPECLLSHL ETFVWIRYDW EREEEKEVAT YILRNARWLK KGTISTNPIE SKDLEKLEER RKMLNELDSV VRASNSCNLV FEFE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)