AT3G52310.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : ABC-2 type transporter family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: plasma membrane; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT5G06530.1); Has 399105 Blast hits to 362643 proteins in 4152 species: Archae - 6998; Bacteria - 314182; Metazoa - 9528; Fungi - 7070; Plants - 5758; Viruses - 7; Other Eukaryotes - 55562 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:19398663..19402861 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 86911.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.31 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.03 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 784 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEPCATIDSS RNGMRLMVIK GDVCVQAPNK TTQQGASQNL NTRNNMEMGT SSSSSGLVKA KSETLAEALK SSSLDFSNGD GSSHGSKQHV RARTLSSPSY 101: SSNSKNRWNT HIRKAKSAHP ALDLAGLTGG AALSRASSAS LGLSFSFTGF TVPHEEIIAS ERCSNDDILE DIEAATSSVV KFQAEPTFPI YLKFIDITYK 201: VTTKGMTSSS EKSILNGISG SAYPGELLAL MGPSGSGKTT LLNALGGRFN QQNIGGSVSY NDKPYSKHLK TRIGFVTQDD VLFPHLTVKE TLTYTALLRL 301: PKTLTEQEKE QRAASVIQEL GLERCQDTMI GGSFVRGVSG GERKRVCIGN EIMTNPSLLL LDEPTSSLDS TTALKIVQML HCIAKAGKTI VTTIHQPSSR 401: LFHRFDKLVV LSRGSLLYFG KASEAMSYFS SIGCSPLLAM NPAEFLLDLV NGNMNDISVP SALKEKMKII RLELYVRNVK CDVETQYLEE AYKTQIAVME 501: KMKLMAPVPL DEEVKLMITC PKREWGLSWW EQYCLLSLRG IKERRHDYFS WLRVTQVLST AIILGLLWWQ SDITSQRPTR SGLLFFIAVF WGFFPVFTAI 601: FTFPQERAML SKERESNMYR LSAYFVARTT SDLPLDLILP VLFLVVVYFM AGLRLRAESF FLSVLTVFLC IVAAQGLGLA IGASLMDLKK ATTLASVTVM 701: TFMLAGGYFV KKVPFFIAWI RFMSFNYHTY KLLVKVQYEE IMESVNGEEI ESGLKEVSAL VAMIIGYRLV AYFSLRRMKL HSST |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)