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AT3G52250.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Duplicated homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Encodes a protein with a putative role in mRNA splicing.
Computational
Description (TAIR10)
Duplicated homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: RNA splicing; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), SANT, eukarya (InterPro:IPR017884); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YDXPeggNOG:KOG1878EMBL:CP002686EnsemblPlants:AT3G52250
EnsemblPlants:AT3G52250.1entrez:824390Gene3D:1.10.10.60GeneID:824390
GO:GO:0003677GO:GO:0005634Gramene:AT3G52250.1hmmpanther:PTHR13992
InParanoid:F4J6V1InterPro:IPR001005InterPro:IPR009057InterPro:IPR017884
iPTMnet:F4J6V1KEGG:ath:AT3G52250KO:K04650ncoils:Coil
OMA:KPRISHTPaxDb:F4J6V1Pfam:PF00249Pfscan:PS51293
PRIDE:F4J6V1PROSITE:PS51293ProteinModelPortal:F4J6V1Proteomes:UP000006548
RefSeq:NP_190793.2SMART:SM00717STRING:3702.AT3G52250.1SUPFAM:SSF46689
TAIR:AT3G52250UniGene:At.35314UniProt:F4J6V1
Coordinates (TAIR10) chr3:+:19376629..19383100
Molecular Weight (calculated) 181760.00 Da
IEP (calculated) 7.07
GRAVY (calculated) -0.67
Length 1656 amino acids
Sequence (TAIR10)
(BLAST)
0001: MPQDHASWDR KELLRQRKHD RPEQSFESPP FRWRDSPSSH HVPREFSSRL GSGDFRRPSC HGKQGGRHQF VEETSHGYTS SRSSARMFDN YRPSASRGDW
0101: RYTRNCRDDR VSVSQKEWKC NTWEMSNGSS RSFERPFGIR NGRRSVDERP LHASDTHSTV VNSLDPANSA HYLDNEISTP VRSLKIKNEH KFSDQRLSLP
0201: SDPHSECISL FERPSSENNY GNKVCSPAKQ CNDLMYGRRL VSDNSLDAPI PNAELEGTWE QLRLKDPQDN NSLHGINDID GDRKCAKESS LGATGKLPLW
0301: NSSGSFASQS SGFSHSSSLK SLGAVDSSDR KIEVLPKIVT VTQSSSGDAT ACATTTHLSE EMSSRKKQRL GWGEGLAKYE KKKVDVNPNE DGTTLMENGL
0401: EELHSLNKNI ADKSPTAAIV PDYGSPTTPS SVACSSSPGF ADKSSPKAAI AASDVSNMCR SPSPVSSIHL ERFPINIEEL DNISMERFGC LLNELLGTDD
0501: SGTGDSSSVQ LTSMNTLLAW KGEILKAVEM TESEIDLLEN KHRTLKLEGR RHSRVVGPSS YCCDGDANVP KEQASCSLDP KATASSVAKT LVRAPVHQAG
0601: LAKVPADVFE DSPGEVKPLS QSFATVEREE DILPIPSMKA AVSSKEINTP AFANQETIEV SSADDSMASK EDLFWAKLLS ANKKYACESS GVFNQLLPRD
0701: FNSSDNSRFP GICQTQFDSH VQEKIADRVG LLRAREKILL LQFKAFQLSW KKDLDQLALA KYQSKSSKKT ELYPNAKNGG YLKLPQSVRL RFSSSAPRRD
0801: SVVPTTELVS YMEKLLPGTH LKPFRDILKM PAMILDEKER VMSRFISSNG LIEDPCDVEK ERTMINPWTS EEKEIFLNLL AMHGKDFKKI ASSLTQKTTA
0901: DCIDYYYKNH KSDCFGKIKK QRAYGKEGKH TYMLAPRKKW KREMGAASLD ILGDVSIIAA NAGKVASTRP ISSKKITLRG CSSANSLQHD GNNSEGCSYS
1001: FDFPRKRTAG ADVLAVGPLS PEQINSCLRT SVSSRERCMD HLKFNHVVKK PRISHTLHNE NSNTLHNENS NEEDDSCSEE SCGETGPIHW TDDERSAFIQ
1101: GFSLFGKNFA SISRYVGTRS PDQCKVFFSK VRKCLGLESI KFGSGNVSTS VSVDNGNEGG GSDLEDPCPM ESNSGIVNNG VCAKMGMNSP TSPFNMNQDG
1201: VNQSGSANVK ADLSRSEEEN GQKYLCLKDD NNLVNNAYVN GGFPSLVSES CRDLVDINTV ESQSQAAGKS KSNDLMSMEI DEGVLTSVTI SSEPLYCGLS
1301: VLSNVIVETP TEISRKGSGD QGATMPKFSS KNQDGVMQAA NRTRNSGLEP ESAPSGFRYP ECLHHVPIEV CTENPIGVSA PRGNPNCHAE SESGNSLVGQ
1401: VDETHDLGWP KNNLELDGRL QVLGHVNPEQ IGLLKATNTE SCQNPQRSVT QDLSRISRSK SDLIVKTQRT GEGFSLTKCT SSAPKPLAVS HKEGRSGHSR
1501: SHSFSLSDTE RLHKNGDVKL FGTVLTTDEN GIKQKHNPCG IVRSSSTLSR DHDTRHHYIN QQHLQNVPIT SYGFWDGNRI QTGLTSLPES AKLLASCPEA
1601: FSTHLKQQVG NSKEILVDVN GGILSFGKHN EDRAESSSAK DEGNIGGVNG VAEAAT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)