AT3G52140.4
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.932 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tetratricopeptide repeat (TPR)-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G28080.1). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:19333232..19341295 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 155176.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.37 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1419 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAGKSNKSKA KRAAQSTTTN STTDVKSDAP APPVAATVPA TAPVTAAAAP VATAAAPVTA PDNGTLTAVD SAVPEANEVA PTIPKADESE SQVENNDAQP 0101: KQGELRLYPV SVKTQSGGKM ELQLNPGDSV MDIRQFLLDA PETCYFTCYE LLLRNKDGET HHLEDYNEIS EVADITIGGC SLEMVAALYD DRSIRAHVHR 0201: ARDLLSLSTL HSSLSTTLAL QYDAALNKVQ NPGDKPKSDV PELECLGFME DVPGSLKKLI NSTSEEIRSV ENIVFSSFNP PPSHRRLVGD LIYLDVVTLE 0301: GNKYCITGTT KTFYVNSSSG NILDPRPSKS GFEAATLIGL LQKLSSKFKK AFREVMEKKA SAHPFENVQS LLPPHSWLRT YPVPDHKRDA ARAEEALTIS 0401: YGSELIGMQR DWNEELQSCR EFPHTSPQER FVSLIENFLR CRILRDRALY KVSSDFVDAA LNGAIGVISR CIPPINPTDP ECLHMYVHNN IFFSFAVDAD 0501: IEQLSKKRPS NQMTEKVSSS EKVSCTEGTC DNEEHNNCNE APLVENEQAT YASANNDLKG TKLYQEADVP GLYNLAMAII DYRGHRVVAQ SVLPGILQGD 0601: KSDALLYGSV DNGKKICWNE DFHAKVLEAA KLLHIKEHSV IDASETVFKL AAPVECKGIV GSDNRHYLLD LMRVTPRDAN YTGPESRFCV LRPELITSFC 0701: QAESLEKSKF KTKADEGGDD SSNVSADTSK VGDALIDGEA NGASNSDQKS ISDKQNTTAE DYAAGSSESS KSCDQIAFNP NVFTDFTLGG NQEEIAADEE 0801: NVKKVSSYLV DVVLPKFIED LCTLEVSPMD GQTLTEALHA HGVNVRYIGR VANGVKHLPH LWDLCLNEIT VRSAKHILKD ILRDIEDHDI GSAVSHFLNC 0901: FFGNYQTAGG KASANSSTAK NQKKFFGADQ PITKKGQGRG KGKASSKKSF SSYMMVDSNI LWSDIQEFAK AKYEFELPEL SRTTAKKVSV LRNLCQKVGV 1001: SIAARKYDFS ANTPFETSDI LDLRPVIKHS VPVCSEAKDL VEMGKVQLAE GMLSESYTFF SEAFSILQQV TGPMHREVAN CCRYLAMVLY HAGDMAGAIM 1101: QQHKELIINE RCLGLDHPDT AHSYGNMALF YHGLNQTELA LQNMGRALLL LGLSSGPDHP DVAATFINVA MMYQDMGKMD TALRYLQEAL KKNERLLGPE 1201: HIQTAVCYHA LAIAFNCMGA FKLSHQHEKK TYDILVKQLG DDDSRTRDSL NWMKTFKMRE LQMTAQKQKG QAANAANTQK AIDLLKAHPD LIHAFQNAAA 1301: TGRTNALNSA VLGETQPRGR GFDERAARAA AEVRKKAAAK GLLVRPQGGV PVQAMPPLSQ LQNMINTATV SSEKGGENGE AKVQEKKESS ENGKTENLAP 1401: AGLGAGLTSL DKKKQKAKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)