AT3G52080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.681 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cation/hydrogen exchanger 28 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a cation:proton exchanger expressed in pollen | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cation/hydrogen exchanger 28 (chx28); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, flower, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/hydrogen exchanger 15 (TAIR:AT2G13620.1); Has 2845 Blast hits to 2827 proteins in 865 species: Archae - 172; Bacteria - 1868; Metazoa - 0; Fungi - 124; Plants - 540; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:19315090..19317735 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 88714.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.00 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.24 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 801 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNSTTTKNVC GDKWYLNLDR PEEALKILVF IAIFVVRTLL HYLMKPLGQP YLTTDFAIGL ILGNIPRFRG AFSGPYSITL NNIIEFGMIC HMFVMGLEMN 101: PSVLLRPPTK DAFIAYTSMI TTFVLAFVTT PFLHYTKTSP YIFSLALSLM ASSTGSPILT RVIANLKIRK SDLGKLASAA GVHTDMISTL LYCFGFIFFP 201: TEKPLARPLH RFFRALLMFC LFLAQVTFTS IVSPIFLNWV NNENPEGKPL KGSHLVMSLA FVVLICSFPT WPPESMYNPI LSAFTAGLFL PNKGRMSKWI 301: INKINYLLST VFYPIFFFWV GFIIHMRNFD ITDKMAWVRF FSLLGTVIAG KVTGTVLCGL LLGYHVPETA SLGLLLTTKG HFHVYLAALA IRTNRVKSTT 401: GALIIFIIVF TVVYSPFVVM DIIKRARKRV PVHIMALQWL DPTTELRILI GLHGPHNIGS TLNVMEICHG GREPGSIFYA TDMVELTDEI AATLKKGGGA 501: GQSNDSVTVT DRSVTEMRES ITAAVNGYGE LRNGQGVTVR RMLALSTFVT MAHDVCGLAD ELMVSIIILP FHKRLNPDGT LDAGHAGFRH VNRKILKNAP 601: CSVGILVDRS FGQTEEAWRP GASMGIAIIF IGGRDDREAL AFAAQVARHP AVKLKVIRFL EDKSSQNAQK RSSILNRASV VDQEEEMKLD DECFAEFYER 701: YIAGGGRVSY MEKHLTNSSE TFTALKSLDG EYGLVIVGRG GGRASSGLTT GLNDWQQCPE LGPIGDVLSG SDFSHNTSML IIQQQRTRGQ LEGLHDDFTI 801: L |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)