AT3G52000.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 0.963 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : serine carboxypeptidase-like 36 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
serine carboxypeptidase-like 36 (scpl36); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 37 (TAIR:AT3G52010.1); Has 4030 Blast hits to 3970 proteins in 473 species: Archae - 0; Bacteria - 582; Metazoa - 647; Fungi - 872; Plants - 1453; Viruses - 0; Other Eukaryotes - 476 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:19293071..19294702 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 54361.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.29 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 482 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGKRQDWSVT ACIFLFLSLA SQIHCRSHIP FPSPKRGVSS SGDTSHFNVI QRESVPSPKD KDLIQQLPGQ PSDVTFKQYG GYVAVNKPAG RFLYYYFVET 101: IKPGNTTPLV IWFNGGPGCS SLGGAFKELG PFRVHSDGKT LFRNPYSWNN EANVLFLETP VGTGFSYSNS PINGKQGDKA TAEDNYMFLV NWLERFPEYK 201: GRDIYIAGQS YAGHYVPQLA QIILHRNNQT LINLRGILIG NPSLNREIQD DFGYKFMFSH GLISQQQMDN YNKFCTDSDL YDWDKCHLAS QKIEAQKTHL 301: DIYNIYAPLC LNSTLSSEPK KCTTIMKADP CSGNYLKAYL NIKEVQEAIH ANTTKIPYEW TSCNTKLLWE WNEKDRYVSL TPILQELMGK GVRVMLYNGD 401: VDLVIPFTST LAVVKTMNLT VVKEWRPWFT GGHVGGFTED YKGNLTFVTV KGAGHSVPTD QPIHALNIFT SFIRNTPLPQ TA |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)