AT3G51700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : PIF1 helicase | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PIF1 helicase; CONTAINS InterPro DOMAIN/s: DNA helicase PIF1, ATP-dependent (InterPro:IPR010285); BEST Arabidopsis thaliana protein match is: PIF1 helicase (TAIR:AT3G51690.1); Has 1335 Blast hits to 1330 proteins in 296 species: Archae - 2; Bacteria - 310; Metazoa - 217; Fungi - 167; Plants - 426; Viruses - 5; Other Eukaryotes - 208 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:19179443..19181145 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39255.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.43 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||
| Length | 344 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALIDIHSSP ASLDEIKPWK INMHIVRTWK GNDKESGNSI DMVLLDSSGT KIHTTIDEAF TKWITNIGGE NINKPNDGET KIDIHEDLLI TECKDPIKTI 101: VDEVYGESFT ESYNPDFYQE RAILCHTNDV ADEINDYMLS QLQGEETKCY GADTIYPTHA SPNDKMLYPL EFLNSIKIPG FPDFKLRLKV GAPVMLLRDL 201: APYGWLRKGT RLQITRVETF VLEAMIITGN NHGEKVLIPR IPSDLREAKF PIKMRRRQFP VKLAFAMTID ESQRQTLSKV GIYLPRQLLF HGQRYVAISK 301: VKSRAGLKVL ITDKDGKPDQ EETKNVVFKE LFTEHLSEPL VNMC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)