AT3G51570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.959 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G45250.1); Has 19036 Blast hits to 14178 proteins in 545 species: Archae - 8; Bacteria - 1068; Metazoa - 1899; Fungi - 85; Plants - 15364; Viruses - 2; Other Eukaryotes - 610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:19126358..19130456 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 139978.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.63 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1226 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEEASSSSEV KALPLPPQHQ VFVNFRGEEL RNSFVSHLRS ALVRHGVNIF IDTNEEKGKP LHVFFQRIEE SRIALAIFSV RYTESKWCLN ELVKMKECMD 0101: KGKLLIIPIF YKVKAYEVRY QKGRFGCVFK NLRNVDVHKK NQWSEALSSV ADRIGFSFDG KSDEHNFING IVEEVKEALS KILLDKTKDA FVYHSKNNSM 0201: SVGREKHEIY GLKQRLEELK EKLDLDCEET RILGVVGMPG IGKTTLAREI YETLRCKFLR HGLIQDIRRT SKEHGLDCLP ALLLEELLGV TIPDIESTRC 0301: AYESYKMELH THKVLVVLDD VSDKEQIDVL LGRCNWIRQG SRIVIATSDK SLIQDVADYT YVVPQLNHKD GLGHFGRYAF DRHSNIHNNE VIMKLSKEFV 0401: HYGRGHPLVL KLLGADLNGK DEDHWKTKLA TLAENSSHSI RDVLQVSYDE LSQVHKDIFL DIACFRSEDE SYIASLLDSS EAASEIKALM NKFMINVSED 0501: RVEMHDLLYT FARELCRRAY AQDGREPHRL WHHQDITDVL KNIEEGAEVR GIFLNMNEMK REMSLDSCTF KSMCGLRYLK IYSSHCPQQC KPNNKINLPD 0601: GLNFPLKEVR YLHWLEFPLK EIPPDFNPQN LVDLKLPHSK IERIWSDDKH KDTPKLKWVN LSHSSNLWDI SGLSKAQRLV FLNLKGCTSL KSLPEINLVS 0701: LEILILSNCS NLKEFRVISQ NLETLYLDGT SIKELPLNFN ILQRLVILNM KGCAKLKEFP DCLDDLKALK ELILSDCWKL QNFPAICERI KVLEILRLDT 0801: TTITEIPMIS SLQCLCLSKN DHISSLPDNI SQLSQLKWLD LKYCKSLTSI PKLPPNLQHL DAHGCCSLKT VSNPLACLTT AQQIYSTFIL TNCNKLERSA 0901: KEEISSFAQR KCQLLLDAQK RCNVSSLISF SICCYISKIF VSICIFLSIS MQNSDSEPLF SICFPGSELP SWFCHEAVGP VLELRMPPHW HENRLAGVAL 1001: CAVVTFPKSQ EQINCFSVKC TFKLEVKEGS WIEFSFPVGR WSNQGNIVAN IASEHVFIGY ISCSKIFKRL ENQYFSSSNP TRSTQSSKCS PTKASLNFMV 1101: IDGTSELPRI EVLKCGLRFF KGVGSSGNYL KKLEVKEAEQ NLSAEKVSED WTYGSSSRCN HAVKTCPEQR QVTVTAEVEA SPEKADNAEF QIKITPREAQ 1201: PQPQPRPCSK TLKWACFTCC DFQKHL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)