AT3G51560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.987 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G19520.1); Has 29226 Blast hits to 20052 proteins in 857 species: Archae - 16; Bacteria - 1964; Metazoa - 4192; Fungi - 293; Plants - 21872; Viruses - 18; Other Eukaryotes - 871 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:19121808..19125913 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 140818.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.25 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1253 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVDCSDVYIS FDRSEDTVRY SFVSHLCAAF RRRGISSFIR ENGSDSESNG FSKLETSRAS VVVFSEKYSS SKSCMEELVK VSERRRKNCL AVVPVFYPVT 0101: KSFMKKQIWN LGDVRSDWPS ALLETVDLPG HELYDTQSDS DFVEEIVADV REKLNMSDNI GIYSKLGKIE TLIYKQPWGV RSIGIWGMPG IGKTTLAKAA 0201: FDQLSGDYEA SCFIKDFNKA FHEKGLYGLL EAHFGKILRE ELGIKSSITR PILLRNVLRH KRVLVVLDDV CKPLDAESFL GGFDWFCPGS LIIITSRDKQ 0301: VFSICRVDQI YEVPGLNEEE ALQLFSRCAF GKEIIHESLQ KLSKKVIDYA NGNPLALIFF GCMSRKNPKP IEIAFPKVKK YLAHEIHDAV KSTYDSLSSN 0401: EKNIFLDIAC LFRGENVDCV IHLLEGCGFF PRVEINVLVE KCLVSMAEGR VVMHNLIQSI GRKIINGGKR RSRLWKPLII KYFLEDRQVL GSEDIEAIFL 0501: DPSALSFDVN PMAFENMYNL RYLKICSSNP GNHYALHLPK GVKSLPEELR LLHWEHFPLL SLPQDFNTRN LVILNMCYSK LQRLWEGTKE LGMLKRIMLC 0601: HSQQLVGIQE LQIALNMEVI DLQGCARLQR FLATGHFQHL RVINLSGCIK IKSFPEVPPN IEELYLKQTG IRSIPTVTFS PQDNSFIYDH KDHKFLNREV 0701: SSDSQSLSIM VYLDNLKVLD LSQCLELEDI QGIPKNLRKL YLGGTAIKEL PSLMHLSELV VLDLENCKRL HKLPMGIGNL SSLAVLNLSG CSELEDIQGI 0801: PRNLEELYLA GTAIQEVTSL IKHLSELVVL DLQNCKRLQH LPMEISNLKS LVTLKLTDPS GMSIREVSTS IIQNGISEIG ISNLNYLLLT FNENAEQRRE 0901: YLPRPRLPSS SLHGLVPRFY ALVSLSLFNA SLMHIPEEIC SLPSVVLLDL GRNGFSKIPE SIKQLSKLHS LRLRHCRNLI LLPALPQSLK LLNVHGCVSL 1001: ESVSWGFEQF PSHYTFSDCF NKSPKVARKR VVKGLAKVAS IGNEHQQELI KALAFSICGP AGADQATSYN LRAGSFATIE ITPSLRKTLL GFAIFVVVSF 1101: SDDSHNNAGL GVRCVSRWKT KKRVVTGKAE KVFRCWAPRE APEVQRDHMF VFYEDAEMHR GGGEGNKPNI MADHVEFEFQ AVNGRNKVLG GNCMVTECDV 1201: CVITAATGAA SLSVTNASKD MSLSKNHSPK LSSVIGKLRF KRVGRFGGCV CLE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)