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AT3G51390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25849075 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:23482856 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DHHC-type zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT3G56930.1); Has 4950 Blast hits to 4948 proteins in 248 species: Archae - 0; Bacteria - 0; Metazoa - 2153; Fungi - 685; Plants - 832; Viruses - 0; Other Eukaryotes - 1280 (source: NCBI BLink).
Protein Annotations
BioGrid:9620BRENDA:2.3.1.225EC:2.3.1.225eggNOG:COG5273
eggNOG:ENOG410IRECEMBL:AL133452EMBL:AY087575EMBL:BT010141
EMBL:CP002686EnsemblPlants:AT3G51390EnsemblPlants:AT3G51390.1entrez:824302
GeneID:824302Genevisible:Q7XA86GO:GO:0005774GO:GO:0008270
GO:GO:0016021GO:GO:0019706Gramene:AT3G51390.1hmmpanther:PTHR22883
HOGENOM:HOG000030117InParanoid:Q7XA86IntAct:Q7XA86InterPro:IPR001594
KEGG:ath:AT3G51390KO:K18932OMA:WWYICEEPaxDb:Q7XA86
Pfam:PF01529Pfam:Q7XA86Pfscan:PS50216PhylomeDB:Q7XA86
PIR:T45770PRIDE:Q7XA86PRO:PR:Q7XA86PROSITE:PS50216
Proteomes:UP000006548RefSeq:NP_566950.1STRING:3702.AT3G51390.1SwissPalm:Q7XA86
TAIR:AT3G51390TMHMM:TMhelixUniGene:At.35395UniGene:At.75576
UniProt:Q7XA86
Coordinates (TAIR10) chr3:+:19075718..19077966
Molecular Weight (calculated) 39230.20 Da
IEP (calculated) 8.37
GRAVY (calculated) 0.12
Length 340 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVCCPFLQP WDRARDQCLL NLPCLSDPVR RSSLLLKLAL VALHLVFIGF LFLFDAEFIE KTKRDPWYMG CYILLFSATL LQYFVTSGSS PGYVVDAMRD
101: VCEASAMYRN PSTTSIQHAS RKSESVVVNV EGGSASCPRR PPTPWGKLVL DLYPPGTSIR NLTCGYCHVE QPPRTKHCHD CDRCVLQFDH HCVWLGTCIG
201: QKNHSKFWWY ICEETTLCIW TLIMYVDYLS NVAKPWWKNA IIILLLVILA ISLIFVLLLL IFHSYLILTN QSTYELVRRR RIPYMRNIPG RVHPFSRGIR
301: RNLYNVCCGN YNLDSLPTAF ELEDRSRPYT CIDMLKCRCC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)