AT3G50580.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||
| Computational Description (TAIR10) |
LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: ECA1 gametogenesis related family protein (TAIR:AT1G44191.1); Has 132049 Blast hits to 55074 proteins in 2314 species: Archae - 393; Bacteria - 25609; Metazoa - 44661; Fungi - 17591; Plants - 17316; Viruses - 4153; Other Eukaryotes - 22326 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:18768767..18769519 | ||||||||||||||||||||
| Molecular Weight (calculated) | 27208.70 Da | ||||||||||||||||||||
| IEP (calculated) | 9.14 | ||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||
| Length | 250 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKTSIVLVAA AFLCLVAFPT TTVGKYWPKI EGWPNPSEIT RNELMLLNTG HSFGYGDSKV WKCTYSNGSA PAISISPSTP IPSTPSTPSP PPPAPKKSPP 101: PPTPKKSPSP PSLTPFVPHP TPKKSPSPPP TPSLPPPAPK KSPSTPSLPP PTPKKSPPPP PSHHSSSPSN PPHHQQNPWE HIERCMINMG PVGMCRMQME 201: VSFYTRLFQV SDYCCNLVVN MKSECDDVAW GFFNDPFFVP LVRYTCHVTC |
||||||||||||||||||||
| See Also |
|
||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)