AT3G50420.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.923 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 48124 Blast hits to 13590 proteins in 226 species: Archae - 0; Bacteria - 6; Metazoa - 116; Fungi - 107; Plants - 47293; Viruses - 0; Other Eukaryotes - 602 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:18710871..18713649 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 88521.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.25 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 794 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTRGSMKRSV LFVETDAAAE YPYANNNLIS MYVRCSSLEQ ARKVFDKMPQ RNIVTLFGLS AVFEYVSMGS SLHSQIIKLG SFQMIFFMPL NEIASSVVEL 101: TRKCVSITVL KRARQIHALV LTAGAGAATE SPYANNNLIS MYVRCGSLEQ ARKVFDKMPH RNVVSYNALY SAYSRNPDFA SYAFPLTTHM AFEYVKPNSS 201: TFTSLVQVCA VLEDVLMGSS LNSQIIKLGY SDNVVVQTSV LGMYSSCGDL ESARRIFDCV NNRDAVAWNT MIVGSLKNDK IEDGLMFFRN MLMSGVDPTQ 301: FTYSIVLNGC SKLGSYSLGK LIHARIIVSD SLADLPLDNA LLDMYCSCGD MREAFYVFGR IHNPNLVSWN SIISGCSENG FGEQAMLMYR RLLRMSTPRP 401: DEYTFSAAIS ATAEPERFVH GKLLHGQVTK LGYERSVFVG TTLLSMYFKN REAESAQKVF DVMKERDVVL WTEMIVGHSR LGNSELAVQF FIEMYREKNR 501: SDGFSLSSVI GACSDMAMLR QGEVFHCLAI RTGFDCVMSV CGALVDMYGK NGKYETAETI FSLASNPDLK CWNSMLGAYS QHGMVEKALS FFEQILENGF 601: MPDAVTYLSL LAACSHRGST LQGKFLWNQM KEQGIKAGFK HYSCMVNLVS KAGLVDEALE LIEQSPPGNN QAELWRTLLS ACVNTRNLQI GLYAAEQILK 701: LDPEDTATHI LLSNLYAVNG RWEDVAEMRR KIRGLASSKD PGLSWIEVNN NNTQVFSSGD QSNPEVVSQA QDELNRLKRN MLCKSSFNKL VCSN |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)