AT3G50150.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.778 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF247) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Plant protein of unknown function (DUF247); INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G50170.1); Has 1158 Blast hits to 1035 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1158; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:18595809..18597551 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59391.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.32 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||
| Length | 509 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVLFSDGRST STHKRYRRLS WFVPIHSFHE ITRRDLGQNL HNHVETYVEP SKIEVKEEKP RETREEWVIS IKDKMEKALS YDATNSWDKL CIYRVPFYLQ 101: ENDKKSYLPQ TVSIGPYHHG KVHLRPMERH KWRAVNMIMA RTKHNIEMYI DAMKELEEEA RACYQGPIDM KNSNEFTEML VLDGCFVLEL FKGTIQGFQK 201: IGYARNDPVF AKRGLMHSIQ RDMIMLENQL PLFVLDRLLG LQTGTPNQTG IVAEVAVRFF KTLMPTSEVL TKSERSLDSQ EKSDELGDNG GLHCLDVFHR 301: SLIQSSETTN QGTPYEDMSM VEKQQQLIHC VTELRGAGVN FMRKETGQLW DIEFKNGYLK IPKLLIHDGT KSLFSNLIAF EQCHTQSSNN ITSYIIFMDN 401: LINSSQDVSY LHHDGIIEHW LGSDSEVADL FNRLCKEVIF DPKDGYLSQL SREVNRYYSR KWNSLKATLR QKYFNNPWAY FSFSAAVILL FLTFFQSFFA 501: VYAYYKPLS |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)