AT3G50120.1::SUBA5

AT3G50120.1

Subcellular Consensus
(Prediction and Experimental)

min:

:max

SUBAcon:
plasma membrane 0.930
What is SUBAcon?

Predictors

External Curations

no data

Experimental Localisations and PPI

FP	MS/MS	PPI
		PMID:24833385 (2014): AT5G59650.1:None: PMID:24833385 (2014): AT5G06320.1:None: PMID:24833385 (2014): AT1G17280.1:None: PMID:24833385 (2014): AT3G17000.1:None: PMID:24833385 (2014): AT4G30850.1:None: PMID:24833385 (2014): AT1G47640.1:None: PMID:24833385 (2014): AT3G03210.1:None: PMID:24833385 (2014): AT4G25360.1:None: PMID:24833385 (2014): AT4G14455.1:None: PMID:24833385 (2014): AT5G47180.1:None: PMID:24833385 (2014): AT2G41705.1:None: PMID:24833385 (2014): AT1G21240.1:None: PMID:24833385 (2014): AT1G14700.1:None: PMID:24833385 (2014): AT3G66654.1:None: PMID:24833385 (2014): AT1G34640.1:None: PMID:24833385 (2014): AT1G65690.1:None: PMID:24833385 (2014): AT2G26180.1:None: PMID:24833385 (2014): AT3G10640.1:None: PMID:24833385 (2014): AT3G12180.1:None:

SUBAcon links
AGI-AGI relationships

Coexpression

PPI

no coexpression data

AT5G47180.1 endoplasmic reticulum
AT1G47640.1 endoplasmic reticulum
AT4G25360.1 endoplasmic reticulum
AT3G12180.1 endoplasmic reticulum
AT3G17000.1 endoplasmic reticulum
AT1G34640.1 extracellular
AT1G14700.1 extracellular
AT1G17280.1 golgi
AT4G30850.1 golgi
AT4G14455.1 golgi
AT3G66654.1 golgi
AT3G10640.1 nucleus
AT2G26180.1 nucleus
AT3G03210.1 plasma membrane
AT2G41705.1 plasma membrane
AT1G65690.1 plasma membrane
AT5G06320.1 plasma membrane
AT1G21240.1 plasma membrane
AT5G59650.1 plasma membrane

Description (TAIR10)

protein_coding : Plant protein of unknown function (DUF247)

Curator
Summary (TAIR10)

Computational
Description (TAIR10)

Plant protein of unknown function (DUF247); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G50170.1); Has 1189 Blast hits to 1046 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1189; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Protein Annotations

eggNOG:ENOG410IG14	eggNOG:ENOG410YCQM	EMBL:AL132978	EMBL:AY924789
EMBL:CP002686	EnsemblPlants:AT3G50120	EnsemblPlants:AT3G50120.1	entrez:824174
GeneID:824174	GO:GO:0016021	Gramene:AT3G50120.1	hmmpanther:PTHR31549
hmmpanther:PTHR31549:SF25	InterPro:IPR004158	KEGG:ath:AT3G50120	ncoils:Coil
OMA:HLDCSND	Pfam:PF03140	PhylomeDB:Q9SN06	PIR:T45865
Proteomes:UP000006548	RefSeq:NP_190581.1	TAIR:AT3G50120	TMHMM:TMhelix
UniGene:At.51000	UniProt:Q9SN06

Coordinates (TAIR10)

chr3:-:18585157..18587246

Molecular Weight (calculated)

62315.50 Da

IEP (calculated)

7.39

GRAVY (calculated)

-0.47

Length

531 amino acids

Sequence (TAIR10)
(BLAST)

001: MVAVFYKDML SWYLLTLKIR EKLETQNQES VLVNQDQNLP GLPEITRSDQ DQNIHNNQQT QSDPAIYVIK ESPKDSRDDW VISITDKLEQ AHRDDDTTLW
101: GKLCIYRVPY YLQENDNKSY FPQTVSLGPY HHGKKRLRSM DRHKWRAVNR VLKRTNQGIK MYIDAMRELE EKARACYEGP LSLSSNEFIE MLVLDGCFVL
201: ELFRGAVEGF TELGYARNDP VFAMRGSMHS IQRDMVMLEN QLPLFVLNRL LELQLGTRNQ TGLVAQLAIR FFDPLMPTDE PLTKSGQSKL ENSLARDKSF
301: DPFADMGELH CLDVFRRSLL RSSPKPEPRL TRKRWSRNTR VADKRRQQLI HCVTELKEAG IKFRRRKTDR FWDMQFKNGY LEIPRLLIHD GTKSLFLNLI
401: AFEQCHIDSS NDITSYIIFM DNLIDSHEDV SYLHYCGIIE HWLGSDSEVA DLFNRLCQEV VFDTEDSYLS RLSIEVNRYY DHKWNAWRAT LKHKYFNNPW
501: AIVSFCAAVI LLVLTFSQSF YAVYAYYKPP S