AT3G50090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.963 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Exonuclease family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Exonuclease family protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: small RNA degrading nuclease 1 (TAIR:AT3G50100.1); Has 1396 Blast hits to 1380 proteins in 227 species: Archae - 0; Bacteria - 4; Metazoa - 618; Fungi - 412; Plants - 213; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:18575432..18577336 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36217.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.74 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||
| Length | 322 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDYLQAMRLR EANRLMIAKF KKESPANDSP EQRLVRLTNE NPQYNVDFLF HSYSKDWFVS DVGMKMSNVM IPNQMLALDC EMVLCEDGTE GVVRVGAVDR 101: NLKVILDEFV KPHKPVVDYR TAITGVTAED VQKATLSLVD IQEKLRPFLS AGAILIDHPI VIDTSLVFKY PNSRKLRRPS LNTLCMSVLG YEVQKAGVSH 201: HCVHDAAAAM KLALAVIKKR VDTTITLTKE AEKSRLFLHR IPHHLSSEEL KKDLALKFFP KNFTIDVKPA KTQGGYYCAV VIFGSSVEAN QAFENVNGYK 301: ETDSSGLPQK LISCSISTFY VR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)