AT3G50030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.983 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM-repeat/Tetratricopeptide repeat (TPR)-like protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM-repeat/Tetratricopeptide repeat (TPR)-like protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (TAIR:AT5G43120.1); Has 1091 Blast hits to 1050 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 664; Fungi - 172; Plants - 154; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18546490..18548132 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57334.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.57 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||
| Length | 501 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLKFDEPKCT NPSCFFCSMK DTNPFRRRSK LAAIFKEIPR TESKDHVLVL SGLWNIAMSE PDDPEFPSLG LFECMSKLIH KSIKNSVWLL KDQNIFIPYY 101: AAHIIGSYVM NKEDLAAMAV DSKVFLVPAL LELLRGKISW VEQRAAARAL GHLASHEKSF EAVSLFEEEI VKLAMEIATN CLKNVYKSFL GVEDRGRLKY 201: QSDLLTRGLG GFETENQKAE EWGIQLQCWS LFLLNCFASR VNRKSPGGLG LIKSLCKTEL GRKRVSEVRE VIERLCDLSR SSDDWKETAL DTLLLLLKDS 301: NVRVAQIVLQ DYHKIKYSGL KMTTEEAHRS IENLWEIKVE RKKKEKLMSE TELEERRKMV KSLKKQGKKK FLKGFVKEAM EIYTVGIDLC PLDMLRDRVV 401: LFSNRAQCYL LLKKVESAIS DATRALCLSG VNNPHGKSLW RRSQAFDLKG STRESLMDCL AFVDHRVKHS NTQRIPYYAA QMIRKQMSAT CIFSGVVSNS 501: R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)