AT3G49970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Phototropic-responsive NPH3 family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT5G67385.1); Has 857 Blast hits to 837 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 832; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18527216..18529066 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59871.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.77 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||
| Length | 526 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLEKLSFLLH KFPLVSKCGF IKKLASESSN DSNIIRIPDF PGGAEGFELV IKFCYDISFE INTENIAMLL CAAEYLEMTE EHSVENLVET IEVYLNEVIL 101: KSLSKSVKVL QKSQDLLPIA ERVRLVDRCI DSIAYAICQE SQSNEDIVDW WADDLAVLKI DMFRRVLVAM IARGFKRYSL GPVLKLYAEK ALRGLVRFLN 201: FLTEQCDIFG KEAKKMEAEQ EHEKRLILET IVSLLPRERN SVSVSFLSIL LRAAIYLETT VACRLDLEKR MGLQLRQAVI DDLLIPYYSF NGDNTMLDVD 301: TVQRILMNYL EFEVEGNSAD FASDIGELME TYLAEIASDR NINFAKFIGF AECIPKQSRM YRAIDIFLKT HPNISEVEKK KVCSLMDCKK LSRDVYAHAA 401: QNDRFQENLS NSDSPAPATA EKTLSPPELS SYKNELSKLN RENQYLKLEL LKVKMKFKEL EKEKAFEVMS GSDCSSSVST ASVAKPRLPR KSFINSVSQK 501: LGKLINPFGL KQGQTKQPKS RRHSIS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)