AT3G49830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.751 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: DNA helicase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TIP49, C-terminal (InterPro:IPR010339), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G67630.1); Has 1217 Blast hits to 1215 proteins in 377 species: Archae - 91; Bacteria - 194; Metazoa - 298; Fungi - 306; Plants - 114; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:18482383..18483940 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52704.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.24 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||
| Length | 473 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAELRLSETR DLTRIERIGA HSHIRGLGLD SVLEPRAVSE GMVGQIKARK AAGVTLELIR DGKISGRAIL IAGQPGTGKI AIAMGIAKSL GQETPFTMIA 101: GSEIFSLEMS KTEALTQAFR KAIGVRIKEE TDVIEGEVVT ISIDRPASSG GSVKKTGKIT MKTTDMESNF DLGWKLIEPL DKEKVQSGDV IVLDRFCGKI 201: TKLGRSFTRS RDFDVMGSKT KFVQCPEGEL EKRKEVLHSV TLHEIDVINS RTQGYLALFT GDTGEIRSET REQSDTKVAE WREEGKAEIV PGVLFIDEVH 301: MLDIECFSFL NRALENDMSP ILVVATNRGM TTIRGTNQIS AHGIPIDFLD RLLIITTQPY TQDEIRNILE IRCQEEDVEM NEEAKQLLTL IGCNTSLRYA 401: IHLINAAALA CLKRKGKVVE IQDIERVYRL FLDTKRSMQY LVEHESEYLF SVPIKNTQEA TAGEETEHEA MEV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)