AT3G49740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (mitochondrial marker)
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G02010.1); Has 46649 Blast hits to 13426 proteins in 218 species: Archae - 0; Bacteria - 21; Metazoa - 50; Fungi - 114; Plants - 45895; Viruses - 0; Other Eukaryotes - 569 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:18447788..18450001 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82017.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.36 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.03 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 737 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRKALCLTES LSAIAENSTT LLNLNRRLTG LTRSGENRNA LKLFADVHRC TTLRPDQYSV SLAITTARHL RDTIFGGQVH CYAIRSGLLC HSHVSNTLLS 101: LYERLGNLAS LKKKFDEIDE PDVYSWTTLL SASFKLGDIE YAFEVFDKMP ERDDVAIWNA MITGCKESGY HETSVELFRE MHKLGVRHDK FGFATILSMC 201: DYGSLDFGKQ VHSLVIKAGF FIASSVVNAL ITMYFNCQVV VDACLVFEET DVAVRDQVTF NVVIDGLAGF KRDESLLVFR KMLEASLRPT DLTFVSVMGS 301: CSCAAMGHQV HGLAIKTGYE KYTLVSNATM TMYSSFEDFG AAHKVFESLE EKDLVTWNTM ISSYNQAKLG KSAMSVYKRM HIIGVKPDEF TFGSLLATSL 401: DLDVLEMVQA CIIKFGLSSK IEISNALISA YSKNGQIEKA DLLFERSLRK NLISWNAIIS GFYHNGFPFE GLERFSCLLE SEVRILPDAY TLSTLLSICV 501: STSSLMLGSQ THAYVLRHGQ FKETLIGNAL INMYSQCGTI QNSLEVFNQM SEKDVVSWNS LISAYSRHGE GENAVNTYKT MQDEGKVIPD AATFSAVLSA 601: CSHAGLVEEG LEIFNSMVEF HGVIRNVDHF SCLVDLLGRA GHLDEAESLV KISEKTIGSR VDVWWALFSA CAAHGDLKLG KMVAKLLMEK EKDDPSVYVQ 701: LSNIYAGAGM WKEAEETRRA INMIGAMKQR GCSWMRL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)