AT3G49670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich receptor-like protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM1,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM2 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
BARELY ANY MERISTEM 2 (BAM2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: in 9 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT5G65700.2); Has 214102 Blast hits to 137812 proteins in 4967 species: Archae - 148; Bacteria - 22093; Metazoa - 65883; Fungi - 10747; Plants - 88678; Viruses - 437; Other Eukaryotes - 26116 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:18417741..18420836 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 109251.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.37 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.04 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1002 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKLLLLLLLL LLLHISHSFT VAKPITELHA LLSLKSSFTI DEHSPLLTSW NLSTTFCSWT GVTCDVSLRH VTSLDLSGLN LSGTLSSDVA HLPLLQNLSL 0101: AANQISGPIP PQISNLYELR HLNLSNNVFN GSFPDELSSG LVNLRVLDLY NNNLTGDLPV SLTNLTQLRH LHLGGNYFSG KIPATYGTWP VLEYLAVSGN 0201: ELTGKIPPEI GNLTTLRELY IGYYNAFENG LPPEIGNLSE LVRFDAANCG LTGEIPPEIG KLQKLDTLFL QVNAFTGTIT QELGLISSLK SMDLSNNMFT 0301: GEIPTSFSQL KNLTLLNLFR NKLYGAIPEF IGEMPELEVL QLWENNFTGS IPQKLGENGR LVILDLSSNK LTGTLPPNMC SGNRLMTLIT LGNFLFGSIP 0401: DSLGKCESLT RIRMGENFLN GSIPKELFGL PKLSQVELQD NYLTGELPIS GGGVSGDLGQ ISLSNNQLSG SLPAAIGNLS GVQKLLLDGN KFSGSIPPEI 0501: GRLQQLSKLD FSHNLFSGRI APEISRCKLL TFVDLSRNEL SGDIPNELTG MKILNYLNLS RNHLVGSIPV TIASMQSLTS VDFSYNNLSG LVPSTGQFSY 0601: FNYTSFVGNS HLCGPYLGPC GKGTHQSHVK PLSATTKLLL VLGLLFCSMV FAIVAIIKAR SLRNASEAKA WRLTAFQRLD FTCDDVLDSL KEDNIIGKGG 0701: AGIVYKGTMP KGDLVAVKRL ATMSHGSSHD HGFNAEIQTL GRIRHRHIVR LLGFCSNHET NLLVYEYMPN GSLGEVLHGK KGGHLHWNTR YKIALEAAKG 0801: LCYLHHDCSP LIVHRDVKSN NILLDSNFEA HVADFGLAKF LQDSGTSECM SAIAGSYGYI APEYAYTLKV DEKSDVYSFG VVLLELITGK KPVGEFGDGV 0901: DIVQWVRSMT DSNKDCVLKV IDLRLSSVPV HEVTHVFYVA LLCVEEQAVE RPTMREVVQI LTEIPKIPLS KQQAAESDVT EKAPAINESS PDSGSPPDLL 1001: SN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)