AT3G49610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Domain of unknown function (DUF313) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF313) (TAIR:AT5G24050.1); Has 142 Blast hits to 142 proteins in 6 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18390413..18391417 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38510.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.46 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||||||||||||||
| Length | 334 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNRNHHDHLD AAGKDMWSRL SDLADKADML YEREGISKDR KSVSEEEEEK KTRFSILVDL VGRLCDQEER RTLGSSPTKT NTLFEGSEKS HLDHHLDHLP 101: QKPRSSLECF FTRVYTRRNH NNVSTSSSLF NTDEFERTET KSPTIRNSQS SPSSCLMENT KRKRYQSSGK SKKPKFDPFS LTAARETPEW LLDVMRKMKG 201: AEGPIKLIYE KTLTATDVKP SESRLLIPFN KLLRNDFLTP EESRAIAIDK EEEEEDTKKI GVKTIIVNQF SKEWSLRFLI WVMKKKKSGN GTLYYTLNRG 301: WNGVVSGNKL KANDNISLWT FRCGGVLCFA LEKE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)