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AT3G49300.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : proline-rich family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49305.1); Has 1521 Blast hits to 483 proteins in 110 species: Archae - 0; Bacteria - 184; Metazoa - 340; Fungi - 49; Plants - 786; Viruses - 24; Other Eukaryotes - 138 (source: NCBI BLink).
Protein Annotations
EMBL:CP002686EnsemblPlants:AT3G49300EnsemblPlants:AT3G49300.1entrez:824091
GeneID:824091Gramene:AT3G49300.1iPTMnet:F4IWT9KEGG:ath:AT3G49300
OMA:PKHDPTKPaxDb:F4IWT9PRIDE:F4IWT9ProteinModelPortal:F4IWT9
Proteomes:UP000006548RefSeq:NP_566918.1TAIR:AT3G49300UniGene:At.10642
UniGene:At.35624UniProt:F4IWT9
Coordinates (TAIR10) chr3:-:18276968..18277590
Molecular Weight (calculated) 9382.42 Da
IEP (calculated) 6.79
GRAVY (calculated) -0.52
Length 86 amino acids
Sequence (TAIR10)
(BLAST)
1: MLSKIKPVVL MSFLLLFPLC SSGFREGHGV THTDQNSLNK VEESIPTIMD YPEPGPDPKH DPTKPGYGFP PPPPPPLSPP PPPKMN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)