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AT3G49070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.520
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF677)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF677); INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT3G19330.1); Has 169 Blast hits to 169 proteins in 18 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVJYeggNOG:ENOG410YFN2EMBL:AL132967EMBL:CP002686
EnsemblPlants:AT3G49070EnsemblPlants:AT3G49070.1entrez:824069GeneID:824069
Genevisible:Q9SMU4GO:GO:0016021Gramene:AT3G49070.1hmmpanther:PTHR31113
hmmpanther:PTHR31113:SF6HOGENOM:HOG000070797InParanoid:Q9SMU4InterPro:IPR007749
KEGG:ath:AT3G49070ncoils:CoilOMA:NDFWARVPaxDb:Q9SMU4
Pfam:PF05055Pfam:Q9SMU4PhylomeDB:Q9SMU4PIR:T46123
PRIDE:Q9SMU4PRO:PR:Q9SMU4Proteomes:UP000006548RefSeq:NP_190476.1
TAIR:AT3G49070TMHMM:TMhelixUniGene:At.43292UniProt:Q9SMU4
Coordinates (TAIR10) chr3:-:18192479..18193729
Molecular Weight (calculated) 47275.20 Da
IEP (calculated) 10.34
GRAVY (calculated) -0.18
Length 416 amino acids
Sequence (TAIR10)
(BLAST)
001: MGIKVSSKIK RILASTGYIP IFIFKYRYYF YFFYCKFARK FVTKKIIILK LSSIGTASGS SNPKDGADVD VREEYANAFR TESYNHFWTR VVQLSRKKSA
101: VSSSSSSPPI ESSSTSARLM SYRLFAHNLL DPDLNTITRI LDVSRVGRHT RTLLSDYFLE TANAFLLCTQ LLKNIHHLRS KYESLKPKFH SENHNSLALI
201: DQFTEISKWF DPFISSGSRI QLIRSGCLYL LKRLESRRDK TRAKLKLING LTHSSGLLVL ALTTTLIVTI ASHAFALFLA APTLLASQFK PAGLRNKLTK
301: TAARLDVAAK GTYILSRDLD TISRLVTRIN DEVNHVRAMA EFWVGRGSGR VRGSEEVARE LKRCEESFSE ELDELEEHIY LCFMTINRAR NLLVKEILDS
401: DDPPNCSFAP KSKKKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)