AT3G49055.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.801 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24560.1); Has 52205 Blast hits to 29376 proteins in 1994 species: Archae - 873; Bacteria - 6150; Metazoa - 27099; Fungi - 3784; Plants - 3062; Viruses - 130; Other Eukaryotes - 11107 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18185166..18186968 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55494.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.04 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||||||
| Length | 480 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDVKDTGINR SDTPISDQDH DFRQWNHSSL DSNFLSLRSQ IFEASYRRTD LIRVNHELFH ERDALRRRNS ELEAGILEEV MIREEMKRDL EVSKETVSEL 101: EGEAKEKTKL LSDIADYVRS MEDRLSKLIR CLNEENVPEE ERGRKLETKE YNSKSILELV KEVVTKLETF QESTKKKKME LSRSVEFLEE ENRDINVLLR 201: AALFEKQTAE KQLKEMNDQK GLALLQIAGR GLQRIGFGFG LGESVEESSE TGNIANEEEE NGVVIAIEKT MKKLRQEVSQ LKISLEESRL EEVGLRKVTE 301: EQAQKLAENT VYINKLQNQE KFLAQNVEEL VKAIREAESE VSRWREACEL EVEAGQREVE VRDQLIAVLK SEVEKLRSAL ARSEGKLKLK EELAKAAMVA 401: EEAAEKSLRL AERRIAQLLS RIEHLYRQLE EAESTERRRG KFRYVWCWPM WRFPTAASTA ATATGSSSYT SNRALLRYDA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)