AT3G49040.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.602 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : F-box/RNI-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT3G49020.1); Has 1697 Blast hits to 1667 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1697; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:18177676..18179339 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48311.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.57 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||
| Length | 415 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEQLWLFENE DRISELHEAL LVHIMSSLPT KTVVATSVLS KRWRHVWKTV QNLKFVSKYH QTFSEDVYRF FMLHKAPFLE SLDLEFSNQL DASDLGILVG 101: IAFARHVRNL VLDLDYYSNF SQLCAARFPS GLCIYDNNKT LETLTLKHSI LLYFPYRVCL KSLRKLHLYK VHFYGKDSVY NLLCGCPSLR DLIVHRYREC 201: METFTIAVPS LERLTIEDSG FGYGCCYVIN APSLKYLNIR RFKYLNSCLI EKAPELAEAK VSDVSDIENE NILESLTSAK RLSIHLSPLE WWNLLTFMLE 301: ASPKLQILKL TDLNMSSTKG NQIGQKWIQP KCVPECLLFH LETFVWTGYE WQRRDEKEVA RYILRNTTSL KKATFSTKPI EPVKLKVFKK RREILNELAS 401: LGRASNPSDF VFESI |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)