AT3G49030.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.935 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : FBD, F-box and Leucine Rich Repeat domains containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
FBD, F-box and Leucine Rich Repeat domains containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT2G04230.1). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:18173138..18174769 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47850.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.67 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||
| Length | 417 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEQQLKTDGL NLSIRDAVKE DRISELPEDL LLQILSDIPT ENVIATSVLS KRWRSLWKMV PNLTFDFTFD PKYHQTFSEN LYRSLTSHEA SVLESLQLNF 101: TRGIDGLNIG MWIATAYVRH VRKLVLVSFG DVRDKRARFR SALFNFNDTL DILEIQDYIL LDLPSPVCLK SLRELRLYEV HFKDEASVCN LLCGCPSLEV 201: LSVHRERNVD VETFTIVVPS LQRLTIYDFC IGGGKGGYVI NAPSLKYLNI VGFEGLDFCL IENAPELVEA EISDVSHIAN ENILESLTSV KRLSLESPIK 301: NSTLRYFFYF VLHKLPCSQL SCIEKGLDGQ NWNPPKCVPE CLLFHLEKFL WTGYEWQRGD EKEVATYILE NARLLKKATF STKRIDLENL EKRREMLNEL 401: ASVARASDSC HLVFHSI |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)