AT3G48980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Arabidopsis thaliana protein of unknown function (DUF821) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF821) (TAIR:AT5G23850.1); Has 681 Blast hits to 670 proteins in 130 species: Archae - 0; Bacteria - 50; Metazoa - 231; Fungi - 111; Plants - 251; Viruses - 2; Other Eukaryotes - 36 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:18155416..18158222 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62761.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.99 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||||||
| Length | 539 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMRNSPSYTS ATHSRNFDTI LSPLVKTGTG ASNRSYAFFS IFLFLLLGAF LSTRLLLDPS VLIEKEAVSV TERETTQSPE YPQSTKLITE KPKEFTLNCA 101: AFSGNDTGTC PKDNYPTSFR SSAGEGESDR SPSATCPDYF RWIHEDLRPW EKTGITREAL ERANATAIFR LAIINGRIYV EKFREAFQTR DVFTIWGFVQ 201: LLRRYPGKIP DLELMFDCVD WPVVKAAEFA GVDQPPPPPL FRYCANDETL DIVFPDWSYW GWAEVNIKPW ESLLKELREG NQRTKWIDRE PYAYWKGNPT 301: VAETRLDLMK CNLSEVYDWK ARLYKQDWVK ESKEGYKQSD LASQCHHRYK IYIEGSAWSV SEKYILACDS VTLMVKPHYY DFFTRGMFPG HHYWPVKEDD 401: KCRSIKFAVD WGNLHMRKAQ DIGKKASEFV QQELKMDYVY DYMFHLLIQY SKLLRFKPEI PQNSTELCSE AMACPRDGNE RKFMMESLVK RPAETGPCAM 501: PPPYDPASFY SVLKRRQSTT SRIEQWESKY WRKQNKTGS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)