AT3G48960.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : Ribosomal protein L13e family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
Ribosomal protein L13e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e, conserved site (InterPro:IPR018256), Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: breast basic conserved 1 (TAIR:AT3G49010.3); Has 735 Blast hits to 735 proteins in 280 species: Archae - 0; Bacteria - 0; Metazoa - 290; Fungi - 166; Plants - 147; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr3:-:18150444..18151412 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 23503.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 11.26 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 206 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MKHNNVIPNG HFKKKWENYV KTSFNQPAMK TRRRIARQNK AVKIFPRPTA GPIRPVVHAQ TLTYNMKVRA GKGFTLEELK AAGIPKKLAP TIGISVDHHR 101: KNRSLEGFQT NVQRLKTYKA KLVIFPRCAR TVKVGDSAQQ ELANATQVQV DHMPIVREMP TMELVKLTSD MKLFNAYDKI RLEGINKRHA GVRAKRAAEA 201: EKEEKK |
||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)