AT3G48620.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.521 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Outer membrane OMP85 family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
Outer membrane OMP85 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: outer membrane; CONTAINS InterPro DOMAIN/s: Bacterial surface antigen (D15) (InterPro:IPR000184); BEST Arabidopsis thaliana protein match is: Outer membrane OMP85 family protein (TAIR:AT3G44160.1); Has 503 Blast hits to 503 proteins in 137 species: Archae - 0; Bacteria - 247; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:18016175..18017750 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 34932.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.76 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||
| Length | 321 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFHGIKGCMI PMYWWLLGDL DLNGVRNSAS SYSGGVNLSK LAVGLDLSEP ASSKWSSTTS VKFEVPGHYL LQTLYMCVRL TMTDGRYQRS GRISYNMQNS 101: LLCSGNTHDS MVVLKQESRF AKATDQGLSH FSMQIEQGIP VVSNWLIFNR FKFVASKGVR FGPAFPLASL TGGSIVGDMT PYQAFAIGGL GSVRGYGEVA 201: VGSGRSCLVA NTELANKMTE GTIFLDCGTD LGSSRLVPVS SLYLLRTRTI KKLLRHENDK AVAELVSGNP SLRQGKPGFG YGFGYGLRFK SPLGHLQVDY 301: AMNAFNQKTL YFGITNLASS T |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)