AT3G48610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : non-specific phospholipase C6 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
non-specific phospholipase C6 (NPC6); FUNCTIONS IN: hydrolase activity, acting on ester bonds; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoesterase (InterPro:IPR007312); BEST Arabidopsis thaliana protein match is: non-specific phospholipase C1 (TAIR:AT1G07230.1); Has 2244 Blast hits to 2129 proteins in 399 species: Archae - 32; Bacteria - 1880; Metazoa - 0; Fungi - 127; Plants - 152; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18011653..18013959 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57913.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.94 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 520 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKPSSASRFS LTFSHFLTLY CLLTQTHVAQ GSHQWQSPIK TVVVLVLENR SFDHLLGWMK NSVNPTINGV TGQECNPVPN STQTICFTSD AEFVDPDPGH 101: SFEAVEQQVF GSGPGQIPSM MGFVEQALSM PGNLSETVMK GFRPEAVPVY AELVKEFAVF DRWFSSIPGP TQPNRLFVYS ATSHGSTSHV KKQLAQGYPQ 201: KTIFDSLHSN DIDFGIYFQN IPTTLFYRNL RQLKYIFNLH QYDLKFKKDA AKGKLPSLTV IEPRYFDLKG LPANDDHPSH DVANGQKLVK EVYEALRSSP 301: QWNETLLVIT YDEHGGFYDH VKTPYVGIPN PDGNTGPAPG FFKFDRLGVR VPTIMVSPWI QKGTVVSEAK GPTESSEYEH SSIPATIKKL FNLSSNFLTH 401: RDAWAATFED VVSHLTTPRT DCPMTLPEVA PMRATEPKED AALSEFQGEV VQLAAVLNGD HFLSSFPEEI GKKMTVKQAH EYVKGATSRF IRASKEAMKL 501: GADKSAIVDM RSSLTTRPHN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)