AT3G48470.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.942 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : embryo defective 2423 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
EMBRYO DEFECTIVE 2423 (EMB2423); CONTAINS InterPro DOMAIN/s: Telomere length regulation protein (InterPro:IPR019337); Has 246 Blast hits to 237 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 75; Plants - 52; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:17951689..17956754 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 114708.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.77 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||
| Length | 1027 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAEGTKQERT LENNLLHKVG EAVSAISDAK HVDQVISAIH SVAVLLFPVD PSLFSGSIGD KYRERVCSSV VPSADERNEW LETFYRGVAF PTFARVLLLD 0101: VASDWLSCFP ISVQKHLYDK FFLDGSVIEV VQVLVPFLHH VGDGGVNANS VQTNVERLLI LCLLENDGVL KITKEIGNIY QGHNSSNGSL KPLLSRLSQI 0201: LTSIPDKARL KSPPLLSSNL YFKHITNQLL QILDDRASCT EANCTVIVLS FVGEVFSRIC RRGLSDLLLS EVTPHVLAQV RRLLNSKIGA IEVDTFQLDP 0301: TTRIWSKTME AVTDPYAVEK MAEQLLHQLY AEHPSDVEAF WTIWTLFHRN VIHQASVRQA KCFLWQLDSF FRYPFFFFHF HPNAVKQCVL ECPPVTNTLA 0401: KGDVTQGLLE TTQRLASVWS KREFLQSVQL EQQAYLQFLF PVTDISDITA ALGLCLENMS REELDRTKDV MHSILQGVSC RLENPGDLVR KMASSIAFMF 0501: SKVIDPKNPL YLDDSITDNA IDWEFGLQTA SITNTMENGD GENKRSASLT EVNESSRRNK QKENRKSKNI SAFVLADPNE IVDLATLNCD TESDKDDGDD 0601: DASVSSDNSS VTSLEPYDLM DDDKDLGKQF THLVDVVGAL RKTDDADGVE KAIYVAEKLV RASPDELTHI AGDLARTLVQ VRCSDIAIEG EEDSAEEKRQ 0701: RALIALLVTR PFESLETLNN ILYSPNVDVS QRIMILDVMA EAARELANSK TLKPKHEARG PLISNISDPQ PWYLPSNAST PWKKVSETGS FHLNWANRFE 0801: RELQSKPGQT KKGKSRRWSL KSADRDQNST DWSQNRFPLY AAAFMLPAMK EFDKKRHGVD LLGRDFVVLG KLVHMLGVCM QCASMHPEAS ALAISLLDML 0901: QRREVCNHPE AYVRRAVLFA ASSVLVSLHP SYIVSTLVEG NLDLSRALEW IRTWALQIAD SDIDRDCYTM ALSCLQLHAE MALQTSRALE STGGSSSSSS 1001: IRPMNISLPS GISKLTSIKL PSSNVHL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)