AT3G48400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.572 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G22355.1); Has 1943 Blast hits to 657 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 0; Plants - 1919; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:17923678..17925589 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70414.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.83 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||
| Length | 619 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MERSVDLPIH KHPLYHSSRF INGRCRGCKQ TSPIYSGYRC NDSDCNHVWY HKECGESLPE INHPSHLEHP LCLIDYRGSG TCAFCGAFLF GPTYHCWICA 101: FNIDIACARK QLPPLAAIEN PKCHNHSLVL LEKQVKKDHC GVCKKTVFGM YPYVCLECDV YFHVECINIS REVHHSSHTN HTLELFGSES LPDSAQKTCL 201: LCDDVSDHLI YHCSVCNFSI CVYCAINPPP LAIEHLKTHE HTLTLLPRQV KFICNACGMK GDGCPYFCLG CGYLIHRKCI DLPRVININR HDHRISLTHH 301: LGLQYSECGV CRQSVNGYYG GYSCSLCPNY VVHPQCAMKD DVWDGIELEG TPEDSEQDTA PFEVVDDNTI KHFSHEKHNL MLNKNGIITQ HDEITRCQAC 401: VLPLSSDPSY SCGQCDYVLH ETCANLPRKK RHVFNNKPFT LHTGGKDSSR NWFECDACRT ISNGFRYVSG DWILDVHCGS MSEPLLHDGH SHPLYYYRRQ 501: GKSCRSCHNK VVKPRVLCCD TCDFDLDFYC ANLPKTVKHC YDEHPLSLCH GEDDVIKDNK YWCDICETET DPKKWFYTCY DCGGGTLMSM DVSMKLFLTA 601: RVLDHSATNA ILDVKIASF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)