AT3G48390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MA3 domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
MA3 domain-containing protein; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT5G63190.2); Has 1943 Blast hits to 788 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 1171; Fungi - 12; Plants - 600; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:17921274..17923270 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70755.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.56 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||
| Length | 633 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATREWFVMN AQQTKLALES PPLFAVKKDD DKDHTCDTGE EPYALVGSPV FNPLEDYKRE VVSIIDEYFS SGDVEVAASD LMDLGLSEYH PYFVKRLVSM 101: AMDRGNKEKE KASVLLSRLY ALVVSPDQIR VGFIRLLESV GDLALDIPDA VNVLALFIAR AIVDEILPPV FLARAKKTLP HSSQGFQVIL VSENSYLSAP 201: HHAELVETKW GGSTHITVEE TKRKISEFLN EYVENGDTRE ACRCIRELGV SFFHHEIVKS GLVLVMESRT SEPLILKLLK EATEEGLISS SQMAKGFSRV 301: ADSLDDLSLD IPSAKTLFES IVPKAIIGGW LDEDSFKERS DQNGGSENLR RFKKDAETII QEYFLSDDIP ELIRSLEDLG LPEYNPVFLK KLITLAMDRK 401: NKEKEMASVF LASLHMEMFS TEDFINGFIM LLESAEDTAL DILAASDELA LFLARAVIDD VLAPLNLEEI SNSLPPKSTG SETIRSARSL ISARHAGERL 501: LRSWGGGTGW AVEDAKDKIW KLLEEYEVGG VISEACRCIR DLGMPFFNHE VVKKALVMAM EKKNDRMLNL LQECFAEGII TTNQMTKGFG RVKDSLDDLS 601: LDIPNAEEKF NSYVAHAEEN GWLHRDFGCS TDS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)