AT3G48380.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.835 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2; CONTAINS InterPro DOMAIN/s: Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 (InterPro:IPR012462); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:17916468..17920099 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70879.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.55 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||
| Length | 640 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVPSSETATV RVLCQKLLLS PNHPGTLQWL IGSPFFPPFT VVSTFRCIHH SPDFQQESDD LRKLLPKGFE VIGGLIIGDS DAEKSAFEAV RAARRLRKHL 101: SEGGELDDEK IVGASCDVGT GTIHFFISKS ENTTKLEPVG SVVYEDKSGK YLWENGCLLH CELPIKLPFY YPASSPSDSK EKFSDAIDAV ITQFKEPYVV 201: YIAETLKKAS GGVPKPVVLR GKDLGFGADA SNINRLPSAD QVSDIKMLSC SHLCLNNKTA PAVNSAENAD KIHISVLLNR SEKLPTSGAP VAEYFPAMEE 301: ARLIVVDLNL DVLTYAPKDL PLMHAVSNLV IPALVDQLYS LKKIILPHLL LRIYHFNPPG VLHPITSMYE LNYGETEMKQ VDVRKLLHLR LGLPLDRPLL 401: RIANALDLSV NDDSKSNMNR RGSTLLKDVH IGIPSSGVSE GVASIIQGSY EYYHYLQDGF DDSGWGCAYR SLQTIISWFR LQHYTSISVP SHREIQQTLV 501: EIGDKDPSFV GSREWIGAIE LSFVLDKLLG VSCKIMNFRS GSELPEKCRE LAMHFENQGT PIMIGGGVLA YTLLGVDYDE GSGDCAFLIL DPHYTGSEDH 601: KKIVNGGWCG WKKAVDSKGK SFFLHNKFYN LLLPQRPNMV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)