AT3G48230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of Unknown Function (DUF239) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of Unknown Function (DUF239); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT5G18460.1); Has 744 Blast hits to 694 proteins in 28 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 10; Plants - 719; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:17855715..17858019 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 42004.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.70 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||
| Length | 373 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIFSIIMAVL LAQASSLPKK TVQSSDGDIV DCFDVRDQPS LDHPLLQNHE IQGAPATGLP YMINKAGKRR VWQVWNQNGT SCPDETIPIR RSVVGAKRFK 101: KKHWTDVRVN RRTVPYAAEE GHEYAIGEVV YLRGIYGTVA TMNVWNPSVE HGTNEFSLSQ IWLVAGHYND SDLNTVEAGW QVFPDHYHDS QPRLFVYWTK 201: DTYQKTGCLN LECPGFVQVT SEFAIGSAFS PTSSYGGSQY DITMYIWKDT KDGNWWLSID SSVIGYWPAR LFTHLAHGPA TLVQWGGEIV NSRSYGQHTT 301: TQMGSGHFAE EGFGKAGSFR NLKIIDYLSY MQPVQEFILQ TKNPTCYTAI KGYSEEWGSH FYYGGPGYNA LCP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)