AT3G48160.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||
| Description (TAIR10) | protein_coding : DP-E2F-like 1 | ||||||||||||
| Curator Summary (TAIR10) |
E2F-like protein, an inhibitor of the endocycle, preserves the mitotic state of proliferating cells by suppressing transcription of genes that are required for cells to enter the DNA endoreduplication cycle. | ||||||||||||
| Computational Description (TAIR10) |
DP-E2F-like 1 (DEL1); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), E2F Family (InterPro:IPR015633); BEST Arabidopsis thaliana protein match is: DP-E2F-like protein 3 (TAIR:AT3G01330.1); Has 1181 Blast hits to 868 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 721; Fungi - 9; Plants - 301; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
|
||||||||||||
| Coordinates (TAIR10) | chr3:+:17783641..17785688 | ||||||||||||
| Molecular Weight (calculated) | 42440.60 Da | ||||||||||||
| IEP (calculated) | 8.57 | ||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||
| Length | 379 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSDLSPERFK LAVTSPSSIP ESSSALQLHH SYSRKQKSLG LLCTNFLALY NREGIEMVGL DDAASKLGVE RRRIYDIVNV LESVGVLTRR AKNQYTWKGF 101: SAIPGALKEL QEEGVKDTFH RFYVNENVKG SDDEDDDEES SQPHSSSQTD SSKPGSLPQS SDPSKIDNRR EKSLGLLTQN FIKLFICSEA IRIISLDDAA 201: KLLLGDAHNT SIMRTKVRRL YDIANVLSSM NLIEKTHTLD SRKPAFKWLG YNGEPTFTLS SDLLQLESRK RAFGTDITNV NVKRSKSSSS SQENATERRL 301: KMKKHSTPES SYNKSFDVHE SRHGSRGGYH FGPFAPGTGT YPTAGLEDNS RRAFDVENLD SDYRPSYQNQ GAYILFTSI |
||||||||||||
| See Also |
|
||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)