AT3G47770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.968 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ABC2 homolog 5 | ||||||||||||||||
| Curator Summary (TAIR10) |
member of ATH subfamily | ||||||||||||||||
| Computational Description (TAIR10) |
ABC2 homolog 5 (ATH5); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATP binding cassette subfamily A4 (TAIR:AT3G47750.1); Has 382620 Blast hits to 352656 proteins in 4008 species: Archae - 7243; Bacteria - 304673; Metazoa - 7582; Fungi - 4643; Plants - 4714; Viruses - 9; Other Eukaryotes - 53756 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:17618055..17622678 | ||||||||||||||||
| Molecular Weight (calculated) | 101962.00 Da | ||||||||||||||||
| IEP (calculated) | 8.47 | ||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||
| Length | 900 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKPVAASFL TQANALFKKN LTYQKRNIWS NVRLIVIPLY LCVVLVCIQA VFDSLVNNSV DNQCGCRCAD DDKNGDGKCE IKSCGLQYSS QNQAVFCAFP 101: NPPPLLPLLH IPPSVNRDSC QRTGSCPSTT SETDYTNYRD PGIYSDLPIF NIQPQCTPAT ILSLSFRQPP LEFHKETKFL ELIDLMVNVS KPEVRCVQGL 201: NLWRNNSLEV NDEIFKGFRK ENHEEIINEV AAAYDLLNTD RNKFNVTIWY YTTYKGDLQD WRVKYVRVPR SVNMVSNAYL QFLRGPGTKI LFDFVKEMPK 301: QETRLRMDMA SLIGPIFFTW VILLLFPVIL TSLVYEKQQR LRIIMKMHGL GDAPYWMISY AYFLAISTLY IVCLMIFGSA IGLKFFRFND YTIQFMFYFL 401: YINLQISIAF LVSSAFSKAV TASVVAYIYV FGSGLLGAFL FQFLIESLSF PRRWIFVMEL YPGFSLYRGL YEFSQYAFQR NLNGRDGMKW KDFRGSAMDE 501: VFTIIIVEWV VALVATYYID RVSSSSKDTF AFLKNPFKLS PTPQMLSFQK ERSDVSVEME KLDVIQEKET VKQLIFERSK NHGIVCDNLK KVYQGRDGNP 601: PKLAVCGLSL AVPSGECFGM LGPNGAGKTS FINMMTGLVK PSSGSAFVQG LDICKDMDKV YISMGVCPQH DLLWETLTGK EHLLFYGRLK NLKGHDLNQA 701: VEESLKSVNL FHGGVADIPA GKYSGGMKRR LSVAISLIGS PKVVYMDEPS TGLDPASRIN LWTVIKRAKK HAAIILTTHS MEEAEFLCDR LGIFVDGRLQ 801: CIGNPKELKG RYGGSYVLTI TTSPEHEKDV ETLVQEVSSN ARKIYHIAGT QKFEFPKEEV RISEVFQAVE NAKRNFTVFA WGFADTTLED VFIKVAKTGL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)