AT3G47760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.585 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ABC2 homolog 4 | ||||||||||||
| Curator Summary (TAIR10) |
member of ATH subfamily | ||||||||||||
| Computational Description (TAIR10) |
ABC2 homolog 4 (ATH4); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATP binding cassette subfamily A4 (TAIR:AT3G47750.1); Has 393805 Blast hits to 360874 proteins in 4063 species: Archae - 7254; Bacteria - 312503; Metazoa - 8237; Fungi - 5197; Plants - 4939; Viruses - 12; Other Eukaryotes - 55663 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:17611787..17616639 | ||||||||||||
| Molecular Weight (calculated) | 98401.00 Da | ||||||||||||
| IEP (calculated) | 8.04 | ||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||
| Length | 872 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGNHVPAGFF TQANSLFRKN LTYQKRNIWS NVRLIVIPFY LCVLLVGIQV LFDTQVNNSA DNRCGCRCID KNGDGKCGQK SCGLQYSSQN QAFFCAFPNP 101: PPLLPLLHIP RPETRSSDRD RDSCRQTGSC PVTILLTGNN HSLGTNYTNY LDPGILSDLP IFNVQPRCTP DTTTFSFPFR QSPLEFHKEV RCVEGLNLWR 201: NNSIEISNEI FKGYRQGNLE EIINEVAAAY DLMDTDINNF NVTIWYNSTY KGDLRDRRVK YVRVPRSVNL VSNAYLEFLQ GSGTKMLFDF VKEMPKQETR 301: LRLEMASLIG PIFFTWVILL LFPVMLTSLV YEKQQHLRII MKMHGLGDEQ VSELFLLVGL KFFRFNDYSI QFIFYFLCIN LQISIAFLVS SAFSKIETAS 401: VAAYLYVFGS GLLGAFLFQF LLEGSWIYIM ELYPGFSLYR GLYEFSQYAF KRNLNGSGGM KWKDFNDSAM EEIFYIIIVE WFVALIAAYY TDKISSSGID 501: PFFFLKNQNP FKKSPSPYGL QRQVSAIAIE MEKLDVAHEL MLETSTGHAI VCDNLKKVYP CRDGNPQKMA VRGLSLAVPS GECFGMLGPN GAGKTSFINM 601: MTGLMKPTSG AAFVHGLDIC KDMDIVYTSI GVCPQHDLLW ETLTGREHLL FYGRLKNLKG SDLDQAVEES LKSVNLFRGG VADKPAGKYS GGMKRRLSVA 701: ISLIGSPKVV YMDEPSTGLD PASRRSLWTA IKRAKNHTAI ILTTHSMEEA EFLCDRLGIF VDGRLQCVGN PKELKARYGG SYVLTMTTPS EHEKDVEMLV 801: QDVSPNAKKI YHIAGTQKFE IPKEEVRISE VFQAVEKAKD NFRVFAWGLA DTTLEDVFIK VARTAQASNV FS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)