AT3G47720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : similar to RCD one 4 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
similar to RCD one 4 (SRO4); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Poly(ADP-ribose) polymerase, catalytic domain (InterPro:IPR012317), RST domain of plant C-terminal (InterPro:IPR022003); BEST Arabidopsis thaliana protein match is: similar to RCD one 5 (TAIR:AT5G62520.1); Has 159 Blast hits to 149 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:17592771..17593966 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35422.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.64 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||||||||||
| Length | 316 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDYSKTEETP INEEQGSTNS SESRSNEELF SDCDQQHSSI ANEFGLTELP KDDKVYELIY RHCQSKLTSH LSNQFEIVSI LKNGFQTPLG QAKLKAFQIY 101: AESVAKKSGS CCGNKAAVAE AARVKYGCCG VEKEELKAIL MYGFSNNALC LSPDNAPLQC MIDPSSSCNE DGISFLLFSR IIMGKSEVVC STSQSYPSSM 201: EFDSGVDSLT SPNKYIIWST HMNTHVLPEF VVCIKTPSIL KRKNPKSPWI SFPVLINSIS KFLNQSQIRL IHKHYKEHQD RRISRCELIQ RLRSITGDSL 301: LVQIIKSVGQ KVHKDT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)