AT3G47660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.870 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Regulator of chromosome condensation (RCC1) family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: chromatin binding, zinc ion binding, Ran GTPase binding; EXPRESSED IN: leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-related (InterPro:IPR017455), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G19420.1); Has 18978 Blast hits to 7605 proteins in 414 species: Archae - 65; Bacteria - 1839; Metazoa - 7882; Fungi - 907; Plants - 2582; Viruses - 3; Other Eukaryotes - 5700 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:17571192..17574805 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 104206.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.59 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 954 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRFSIRKLRS VPTDRENEQA IAILKKGAYL LKYGRRGKPK FYPFRLSSDE IYLLWYCGKK EKRLKLSSVT RIIPGQRTAV FRRYPQPTKE YQSFSLIYGE 101: RSLDLDKDEA EFWLTTLRAL LSRNNSSALV LHSRSRSLAP ENGEQSSSSQ NSKSNIRSVS SDTSYEEHAK KASGSHCNTP QRLGKVFSEV LSQTAVLKAL 201: SLDELVHKPH TSPPETIENR PTNHSSPGVD TSKYSISSAV SSSSQGSTFE DLKSLCDVFV WGESIGDGLL GGGMHKSGSS SSLMTDSFLP KVLKSHVALD 301: AQSISCGTNY AVLVTKQGQM YSWGEESGGR LGHGVCSYVP HPKLIDEFNG STVELADCGE FHTCAVTASG DLYAWGDGDH NAGLLGLGSG ASHWKPVRIL 401: GQMEGIYVKA ISCGPWHTAF VTSEGKLFTF GDGTFGALGH GDRISTNIPR EVEALNGCRT IKAACGVWHS AAVVSVFGEA TSSGKLFTWG DGDDGRLGHG 501: DIECRLIPSC VTELDTTSFQ QVACGQSITV ALSMSGQVYA MGTADPSHDI VRAPSCIEGG LGKSFVQEVA CGFHHIAVLN SKAEVYTWGK GSNGQLGHGD 601: TEYRCMPTLV KALKGKQVRK VVCGSNYTAT ICLHKPITGT DSTKCSGCRH PFNYMRKLHN CYNCGSVFCN SCTSKKSLAA AMAPKTNRPY RVCDDCYIKL 701: EGIRESLATP ANSARFSNAS LPSSYEMDEI GITPQRQLLR VDSFDFFRQT KHADLKTIGE TSGGSCTSSI HSNMDIKGSF NLKGIRRLSR LTSFDSVQEE 801: GKQRTKHCAS KSDTSSLIRH SVTCGLPFSR RGSVELFPLS IKSSPVESVA TTSDFTTDIT DHELLQEVPK KSNQCLSHEI SVLKAQVEEL TLKSKKLETE 901: LGKTSKKLEV AVLMARDDAE KIKSSEEIVR SLTLQLMNTT KKEVDKTRRH RNSF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)