AT3G47610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transcription regulators;zinc ion binding | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
transcription regulators;zinc ion binding; FUNCTIONS IN: transcription regulator activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2HC5-type (InterPro:IPR009349); Has 342 Blast hits to 320 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 117; Plants - 38; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:17549178..17551204 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44562.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.66 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||
| Length | 408 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGTAVGQWLE EALVDLCRKP ETGLNFDRDV ISGLVSYCDL AQPVDAKEYL DNIIGKEGKS IIAEYLQRRG YKDPSSHVAA SSGPELQMYV KPKVDNGASS 101: GTKKPFKTPK EGTSSNQQAG TGKLTAPAQQ VNPKKKKGGK VISLAEAAKG SIVFQQGKPC ACQARRHHLV SNCLSCGKIV CEQEGEGPCS FCGALVLKEG 201: STYAGLEVGY TPVSDADVAA EAYAKRLVEY DRNSAARTTV IDDQSDYYES ESSTWLSAEE KELVRKKREE IEEAERVKKS KVVMTFDLIG RKVLLNEDDI 301: SELESGNRIL GPPETKNVNR IKPNPTARLV PIFLDPGPTE KKPNSTTTKK DNKKNRNGLC LEITGRVQHD RSELKYLQAD PKSDGKSWPS GNDGLHVEDG 401: GECSLDYD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)