AT3G47490.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : HNH endonuclease | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
HNH endonuclease; FUNCTIONS IN: nucleic acid binding, endonuclease activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HNH nuclease (InterPro:IPR003615), HNH endonuclease (InterPro:IPR002711); BEST Arabidopsis thaliana protein match is: HNH endonuclease domain-containing protein (TAIR:AT1G18680.1); Has 116 Blast hits to 116 proteins in 31 species: Archae - 0; Bacteria - 23; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:17498337..17500731 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 26280.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.15 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.83 | ||||||||||||||||||||||||||||||||
| Length | 234 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDWPTTTLIS RRICNLLIFF VKLNHKNLSI DSDNPQHSAM KPDPTRRRNR ALSSSSPSKT RPELSSGSPN RNTGEARGGK VKTSATLLDR EEMGLFPGSG 101: YGDPNPEPRS FPYSVKQQCW EKAEKIKGRD PERWRRDHLG NIVFRKLVGC PGCLCHDYDH IVPYSKGGKS TLENCQVLQA KVNRSKGNKT DISRSELIQR 201: SSYCRVAGRD MDLIELTAYG NVQRAPTSSG CRIQ |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)