AT3G47190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.971 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity, oxidoreductase activity, iron ion binding; INVOLVED IN: oxidation reduction, ethylene biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G58660.1); Has 7465 Blast hits to 7438 proteins in 931 species: Archae - 0; Bacteria - 953; Metazoa - 103; Fungi - 601; Plants - 4711; Viruses - 0; Other Eukaryotes - 1097 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:17374513..17376032 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37394.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.17 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||
| Length | 331 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSNSESYPPE FRPLMSEKST ETGLDRSKDI DIPVIDMEHL DMEKLREACK DWGIFHLENT GIPLTFMSQV KEITESVLSL PFEEKRTLFG VNSPLSYYWG 101: THTVSPSGKA VTRAPQESSG HLFEGINIPL ASLSRLLALS CTDPKLESFR VVMEEYGKHV TRIIVTLFEA IIETLSLELS GDQKMGYLSE STGVIRVQRY 201: PQCTESPGLE AHTDSSVISI INQDDVGGLE FMKDGEWFNV KPLASSFVVG LGDMMQVISD EEYKSVLHKV GKRMRKKERY SIVNFVFPDK DCMFNSTRYK 301: PFKFSEFEAQ VKLDVETHGS KVGLSRFLSN P |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)