AT3G47050.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.954 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Glycosyl hydrolase family protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: sperm cell, pollen tube; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT3G47010.1); Has 10572 Blast hits to 9756 proteins in 1589 species: Archae - 69; Bacteria - 6515; Metazoa - 14; Fungi - 1565; Plants - 482; Viruses - 0; Other Eukaryotes - 1927 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:17328092..17330857 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 67255.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.08 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 612 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MVDNEKSYVY KNREAPVEAR VKDLLSRMTL AEKIGQMTLI ERSVASEAVI RDFSIGSVLN RAGGWPFEDA KSSNWADMID GFQRSALESR LGIPIIYGID 101: AVHGNNDVYG ATIFPHNIGL GATRDADLVK RIGAATALEV RACGAHWAFA PCVAVVKDPR WGRCYESYGE VAQIVSEMTS LVSGLQGEPS KDHTNGYPFL 201: AGRKNVVACA KHFVGDGGTN KAINEGNTIL RYEDLERKHI APYKKCISQG VSTVMASYSS WNGDKLHSHY FLLTEILKQK LGFKGYVVSD WEGLDRLSDP 301: PGSNYRNCVK IGINAGIDMV MVPFKYEQFR NDLIDLVESG EVSMARVNDA VERILRVKFV AGLFEFPLTD RSLLPTVGCK EHRELAREAV RKSLVLLKNG 401: RYGEFLPLNC NAERILVVGT HADDLGYQCG GWTKTMYGQS GRITDGTTLL DAIKAAVGDE TEVIYEKSPS EETLASGYRF SYAIVAVGES PYAETMGDNS 501: ELVIPFNGSE IITTVAEKIP TLVILFSGRP MFLEPQVLEK AEALVAAWLP GTEGQGIADV IFGDYDFRGK LPATWFKRVD QLPLDIESNG YLPLFPLGFG 601: LNGDSVENSD TV |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)