AT3G47010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.838 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glycosyl hydrolase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 3, active site (InterPro:IPR019800); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT3G47000.1); Has 10470 Blast hits to 9681 proteins in 1554 species: Archae - 69; Bacteria - 6453; Metazoa - 14; Fungi - 1551; Plants - 481; Viruses - 0; Other Eukaryotes - 1902 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:17316758..17319518 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66269.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.05 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 609 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAETEESSWV YKNRDAPVEA RVKDLLSRMT LPEKIGQMTQ IERSVASPQV ITNSFIGSVQ SGAGSWPLED AKSSDWADMI DGFQRSALAS RLGIPIIYGT 101: DAVHGNNNVY GATVFPHNIG LGATRDADLV KRIGAATALE IRASGVHWTF APCVAVLGDP RWGRCYESYS EAAKIVCEMS LLISGLQGEP PEEHPYGYPF 201: LAGRNNVIAC AKHFVGDGGT EKGLSEGNTI TSYEDLEKIH VAPYLNCIAQ GVSTVMASFS SWNGSRLHSD YFLLTEVLKQ KLGFKGFLVS DWDGLETISE 301: PEGSNYRNCV KLGINAGIDM VMVPFKYEQF IQDMTDLVES GEIPMARVND AVERILRVKF VAGLFEHPLA DRSLLGTVGC KEHREVAREA VRKSLVLLKN 401: GKNADTPFLP LDRNAKRILV VGMHANDLGN QCGGWTKIKS GQSGRITIGT TLLDSIKAAV GDKTEVIFEK TPTKETLASS DGFSYAIVAV GEPPYAEMKG 501: DNSELTIPFN GNNIITAVAE KIPTLVILFS GRPMVLEPTV LEKTEALVAA WFPGTEGQGM SDVIFGDYDF KGKLPVSWFK RVDQLPLNAE ANSYDPLFPL 601: GFGLTSNFG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)