AT3G47000.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Glycosyl hydrolase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 3, active site (InterPro:IPR019800); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT3G47010.1); Has 10697 Blast hits to 9860 proteins in 1558 species: Archae - 69; Bacteria - 6575; Metazoa - 14; Fungi - 1579; Plants - 487; Viruses - 0; Other Eukaryotes - 1973 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:17313811..17316539 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66312.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.00 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 608 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVVEESSCVY KNGDAPVEAR VKDLLSRMTL PEKIGQMTQI ERRVASPSAF TDFFIGSVLN AGGSVPFEDA KSSDWADMID GFQRSALASR LGIPIIYGTD 101: AVHGNNNVYG ATVFPHNIGL GATRDADLVR RIGAATALEV RASGVHWAFS PCVAVLRDPR WGRCYESYGE DPELVCEMTS LVSGLQGVPP EEHPNGYPFV 201: AGRNNVVACV KHFVGDGGTD KGINEGNTIA SYEELEKIHI PPYLKCLAQG VSTVMASYSS WNGTRLHADR FLLTEILKEK LGFKGFLVSD WEGLDRLSEP 301: QGSNYRYCIK TAVNAGIDMV MVPFKYEQFI QDMTDLVESG EIPMARINDA VERILRVKFV AGLFGHPLTD RSLLPTVGCK EHRELAQEAV RKSLVLLKSG 401: KNADKPFLPL DRNAKRILVT GTHADDLGYQ CGGWTKTWFG LSGRITIGTT LLDAIKEAVG DETEVIYEKT PSKETLASSE GFSYAIVAVG EPPYAETMGD 501: NSELRIPFNG TDIVTAVAEI IPTLVILISG RPVVLEPTVL EKTEALVAAW LPGTEGQGVA DVVFGDYDFK GKLPVSWFKH VEHLPLDAHA NSYDPLFPFG 601: FGLNSKPV |
||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)