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AT3G46950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Mitochondrial transcription termination factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mitochondrial transcription termination factor family protein; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT1G61960.1); Has 1049 Blast hits to 852 proteins in 58 species: Archae - 2; Bacteria - 13; Metazoa - 40; Fungi - 2; Plants - 981; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XT49eggNOG:KOG1267EMBL:AL096859EMBL:AY045902
EMBL:AY117265EMBL:CP002686EnsemblPlants:AT3G46950EnsemblPlants:AT3G46950.1
entrez:823848GeneID:823848GO:GO:0003690GO:GO:0005739
GO:GO:0006355Gramene:AT3G46950.1hmmpanther:PTHR13068hmmpanther:PTHR13068:SF31
HOGENOM:HOG000113939InterPro:IPR003690KEGG:ath:AT3G46950KO:K15032
OMA:GSENPPIPfam:PF02536PhylomeDB:Q9STG7PIR:T12953
Proteomes:UP000006548RefSeq:NP_190279.1SMART:SM00733SMR:Q9STG7
STRING:3702.AT3G46950.1TAIR:AT3G46950UniGene:At.28750UniGene:At.48743
UniProt:Q9STG7
Coordinates (TAIR10) chr3:+:17289452..17290804
Molecular Weight (calculated) 51339.40 Da
IEP (calculated) 10.17
GRAVY (calculated) -0.12
Length 450 amino acids
Sequence (TAIR10)
(BLAST)
001: MFSLILHGRK SVELQKWRNL RVTVSIVQNA FPFTTKSFSS TIAKDSSPKG STFTVSYLVE SLGLTKKLAE TISKKVTFED KVNPDSVLNL LRSNGFKDSQ
101: ISRIIRAYPR LLVTDAEKSL RPKLQFLKSR GASSSEVIEI VSNVPTILDK KGEESVSLYY DFVKDIMQDG KSLCISCPEG KKGNRIRNIS VLRELGVPQK
201: LLFSLLISRY QPVCGKEKFE ESLKKVVDMG FDPAKSKFVE ALHVVYEMSE KTIEEKVNVY KRLGFSEAEI WAIFKKWPYF LKFSEKKIIL MFETLKKCGL
301: VEEEIISVLK SRPQCIRSSE QKILDSIEMF LGLGFSRDDF KMMVKRYPCC TAYSGETLRK KFEVLVKMMN WPLEAVVMIP TVLGYSLEKR IVPRSNVIKA
401: LMSKGLIGSE NPPISSVLVC TDQEFLKRYV MKHDKLVPKL MAIFNRGRVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)