AT3G46950.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Mitochondrial transcription termination factor family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Mitochondrial transcription termination factor family protein; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT1G61960.1); Has 1049 Blast hits to 852 proteins in 58 species: Archae - 2; Bacteria - 13; Metazoa - 40; Fungi - 2; Plants - 981; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:17289452..17290804 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51339.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.17 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||
| Length | 450 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFSLILHGRK SVELQKWRNL RVTVSIVQNA FPFTTKSFSS TIAKDSSPKG STFTVSYLVE SLGLTKKLAE TISKKVTFED KVNPDSVLNL LRSNGFKDSQ 101: ISRIIRAYPR LLVTDAEKSL RPKLQFLKSR GASSSEVIEI VSNVPTILDK KGEESVSLYY DFVKDIMQDG KSLCISCPEG KKGNRIRNIS VLRELGVPQK 201: LLFSLLISRY QPVCGKEKFE ESLKKVVDMG FDPAKSKFVE ALHVVYEMSE KTIEEKVNVY KRLGFSEAEI WAIFKKWPYF LKFSEKKIIL MFETLKKCGL 301: VEEEIISVLK SRPQCIRSSE QKILDSIEMF LGLGFSRDDF KMMVKRYPCC TAYSGETLRK KFEVLVKMMN WPLEAVVMIP TVLGYSLEKR IVPRSNVIKA 401: LMSKGLIGSE NPPISSVLVC TDQEFLKRYV MKHDKLVPKL MAIFNRGRVS |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)